Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot

Table 1 Abundance and distribution of the 14 DcSto families in D. carota

DcSto		Number of DcSto insertion sites
DcSto	Total	UIS^a	PrC^b	2 kb upstream	5’UTR^c	cds^d	intron	3’UTR	2 kb downstream
DcSto1	1685	1145	12.70	468	40	4	388	32	265
DcSto2	2594	1739	12.20	763	92	10	450	45	441
DcSto3	821	489	10.39	238	28	4	166	24	145
DcSto4	315	153	6.88	70	9	1	87	4	62
DcSto5	1385	916	11.16	419	53	0	204	27	260
DcSto6	3633	2512	13.23	932	87	8	903	86	702
DcSto7a	1484	983	12.10	456	38	9	296	37	266
DcSto7b	2887	2284	17.50	972	168	17	428	91	527
DcSto7c	256	143	9.85	70	9	0	48	7	55
DcSto8	857	637	12.16	233	35	6	210	13	145
DcSto9	266	140	9.82	73	11	1	57	7	39
DcSto10	301	184	9.87	85	11	0	34	11	49
DcSto11	155	72	6.33	41	4	1	23	3	35
DcSto12	1587	1068	11.18	393	60	6	323	52	336
PIS^e	292		–	83	10	0	30	3	58
Total/average	18,518	12,464	11.10	5296	655	67	3647	442	3385

^aUIS Unique insertion sites, ^bPrC Proliferation coefficient (total number of insertions/average number of insertions per plant), ^cUTR Untranslated region, ^dcds coding sequence, ^ePIS Parallel insertion sites

ISSN: 1759-8753