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| |
LTR vs LTR
|
LTR vs consensus
|
gag vs consensus
|
pol vs consensus a
|
env vs consensus b
|
Average
|
O.C.A. c
|
|---|
|
1p36.13
|
14.1
|
21.0
|
22.5
|
no pol (62 nt only)
|
31.9
|
22.4
|
rhesus
|
|
1p22.2
|
no 5′ and 3’LTRs
|
no 5′ and 3’LTRs
|
no gag
|
no pol
|
45.0
|
45.0
|
rhesus
|
|
1q22
|
14.7
|
44.1
|
35.7
|
28.9
|
32.7
|
31.2
|
rhesus
|
|
6p22.1
|
12.7
|
36.5
|
43.0
|
18.9
|
32.8
|
28.8
|
rhesus
|
|
6p21.33a
|
22.9
|
18.0
|
25.2
|
21.3
|
21.3
|
21.7
|
rhesusd
|
|
6p21.33b
|
22.9
|
18.0
|
25.2
|
21.3
|
21.3
|
21.7
|
orangutand
|
|
6q22.31
|
17.2
|
38.8
|
38.9
|
44.8
|
35.1
|
35.0
|
rhesus
|
|
19p13.2
|
no 5′ and 3’LTRs
|
no 5′ and 3’LTRs
|
e
|
20.8
|
no env (48 nt only)
|
20.8
|
rhesus
|
|
19q13.41
|
no 3’LTR
|
46.0
|
37.4
|
27.2
|
45.9
|
39.1
|
rhesus
|
|
Yq11.221
|
20.8
|
45.2
|
41.5
|
30.4
|
44.7
|
36.5
|
rhesus
|
|
Average
|
17.9
|
33.5
|
33.7
|
26.7
|
34.5
|
28,58
| |
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apartial sequence: nucleotides 1277–2571 in LTR14-HERVKC4-LTR14
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bpartial sequence: nucleotides 4103–5810 in LTR14-HERVKC4-LTR14
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cOldest Common Ancestor
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dProvirus loss in various intermediate species: chimpanzee, gorilla, orangutan and gibbon (6p21.33a); chimpanzee, gorilla, gibbon and rhesus (6p21.33b)
-
esequence showing an highly divergent gag sequence, giving an estimated T of 165,7 that was not taken into account for the final T calculation
